PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G20870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 283aa    MW: 30392.3 Da    PI: 7.2596
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G20870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde+l  +v+ +G g +W + +++ g++R++k+c++rw++yl
  LPERR05G20870.1 14 RGPWSPEEDEQLRSYVHSHGIGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                     89******************999************************97 PP

2Myb_DNA-binding35.91.7e-1171111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       T +Ed ++  + +  G++ W+ Ia++++ gRt++++k++w++
  LPERR05G20870.1  71 YTDQEDHIICTLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                      699****************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.077966IPR017930Myb domain
SuperFamilySSF466896.68E-2711109IPR009057Homeodomain-like
SMARTSM007178.4E-121364IPR001005SANT/Myb domain
PfamPF002491.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-241569IPR009057Homeodomain-like
CDDcd001671.14E-91662No hitNo description
SMARTSM007178.5E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129413.69567117IPR017930Myb domain
PfamPF002494.6E-1070111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2170116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDEQLRSYVH SHGIGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTDQEDHIIC TLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMGA  120
THAQPRVATP PPGQCTSSPA PSLSPASSSV TSSSGDACSF AATNTIYPPA APASQLIRFD  180
AQPLPPASQT EFAAPVPLND GGVLSLDDVF LSELTAGEPL FPYAELFSGF ADLPLPVPVV  240
PEKAAAMELS ACYFPNMAEI WAASDHSHGH GHAKPHGLYN TLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084521e-167AK108452.1 Oryza sativa Japonica Group cDNA clone:002-143-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637875.11e-129PREDICTED: transcription factor RAX2
TrEMBLA0A0D9WJH30.0A0A0D9WJH3_9ORYZ; Uncharacterized protein
STRINGBGIOSGA017601-PA1e-129(Oryza sativa Indica Group)
STRINGLOC_Os05g48010.11e-129(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-69myb domain protein 36